IL_9AX8_177

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAG*CUUUGC

Length

11 nucleotides

Bulged bases

9AX8|1|a|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX8_177 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3969

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

9AX8|1|a|G|75
9AX8|1|a|G|76
9AX8|1|a|A|77
9AX8|1|a|A|78
9AX8|1|a|G|79
*
9AX8|1|a|C|90
9AX8|1|a|U|91
9AX8|1|a|U|92
9AX8|1|a|U|93
9AX8|1|a|G|94
9AX8|1|a|C|95

Current chains

Chain a

16S ribosomal RNA

Nearby chains