IL_9AZS_110
3D structure
- PDB id
- 9AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Post-eEF1A-AT-P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 9AZS|1|L5|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZS_110 not in the Motif Atlas
- Homologous match to IL_8CRE_084
- Geometric discrepancy: 0.0822
- The information below is about IL_8CRE_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47346.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9AZS|1|L5|C|2867
9AZS|1|L5|G|2868
9AZS|1|L5|U|2869
9AZS|1|L5|A|2870
9AZS|1|L5|A|2871
9AZS|1|L5|C|2872
*
9AZS|1|L5|G|2877
9AZS|1|L5|G|2878
9AZS|1|L5|A|2879
9AZS|1|L5|U|2880
9AZS|1|L5|A|2881
9AZS|1|L5|A|2882
9AZS|1|L5|G|2883
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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