IL_9AZS_208

3D structure

PDB id

9AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZS_208 not in the Motif Atlas

Homologous match to IL_8CRE_412

Geometric discrepancy: 0.091

The information below is about IL_8CRE_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

9AZS|1|S2|C|459
9AZS|1|S2|A|460
9AZS|1|S2|U|461
*
9AZS|1|S2|A|468
9AZS|1|S2|A|469
9AZS|1|S2|G|470

Current chains

Chain S2

18S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24