IL_9B00_043

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGGC*GCCAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B00|1|1A|G|1059
9B00|1|1A|U|1060
9B00|1|1A|G|1062
9B00|1|1A|G|1063
9B00|1|1A|C|1064
*
9B00|1|1A|G|1074
9B00|1|1A|C|1075
9B00|1|1A|C|1076
9B00|1|1A|A|1077
9B00|1|1A|U|1078
9B00|1|1A|C|1079

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains