IL_9B00_074
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UCAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B00_074 not in the Motif Atlas
- Homologous match to IL_8VTW_073
- Geometric discrepancy: 0.0963
- The information below is about IL_8VTW_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89021.1
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9B00|1|1A|U|1851
9B00|1|1A|C|1852
9B00|1|1A|A|1853
9B00|1|1A|A|1854
9B00|1|1A|G|1855
*
9B00|1|1A|C|1887
9B00|1|1A|G|1888
9B00|1|1A|A|1889
9B00|1|1A|A|1890
9B00|1|1A|G|1891
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1y
- Transfer RNA; tRNA
Coloring options: