IL_9B00_086

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

9B00|1|1A|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_086 not in the Motif Atlas

Homologous match to IL_8VTW_084

Geometric discrepancy: 0.3618

The information below is about IL_8VTW_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B00|1|1A|G|2110
9B00|1|1A|C|2111
9B00|1|1A|G|2112
9B00|1|1A|U|2113
9B00|1|1A|A|2114
9B00|1|1A|G|2115
9B00|1|1A|G|2116
9B00|1|1A|A|2117
9B00|1|1A|U|2118
9B00|1|1A|A|2119
9B00|1|1A|G|2120
*
9B00|1|1A|C|2178
9B00|1|1A|C|2179

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA