IL_9B00_087

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAGCC*GGCGCCGGUGAAAUAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B00|1|1A|G|2124
9B00|1|1A|G|2125
9B00|1|1A|A|2126
9B00|1|1A|G|2127
9B00|1|1A|C|2128
9B00|1|1A|C|2129
*
9B00|1|1A|G|2159
9B00|1|1A|G|2160
9B00|1|1A|C|2161
9B00|1|1A|G|2162
9B00|1|1A|C|2163
9B00|1|1A|C|2164
9B00|1|1A|G|2165
9B00|1|1A|G|2166
9B00|1|1A|U|2167
9B00|1|1A|G|2168
9B00|1|1A|A|2169
9B00|1|1A|A|2170
9B00|1|1A|A|2171
9B00|1|1A|U|2172
9B00|1|1A|A|2173
9B00|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA