IL_9B00_193

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAUC*GAUAG

Length

11 nucleotides

Bulged bases

9B00|1|2A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_193 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3987

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9B00|1|2A|C|280
9B00|1|2A|G|281
9B00|1|2A|A|282
9B00|1|2A|A|283
9B00|1|2A|U|284
9B00|1|2A|C|285
*
9B00|1|2A|G|356
9B00|1|2A|A|357
9B00|1|2A|U|358
9B00|1|2A|A|359
9B00|1|2A|G|360

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains