IL_9B00_209
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B00_209 not in the Motif Atlas
- Homologous match to IL_8VTW_026
- Geometric discrepancy: 0.1301
- The information below is about IL_8VTW_026
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.3
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9B00|1|2A|U|858
9B00|1|2A|G|859
9B00|1|2A|U|860
9B00|1|2A|A|861
9B00|1|2A|G|862
*
9B00|1|2A|C|915
9B00|1|2A|G|916
9B00|1|2A|A|917
9B00|1|2A|A|918
9B00|1|2A|G|919
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 23
- 50S ribosomal protein L30
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2Q
- 50S ribosomal protein L16
Coloring options: