IL_9B00_259

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

9B00|1|2A|C|2055, 9B00|1|2A|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_259 not in the Motif Atlas

Homologous match to IL_8VTW_078

Geometric discrepancy: 0.0881

The information below is about IL_8VTW_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87034.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9B00|1|2A|A|2054
9B00|1|2A|C|2055
9B00|1|2A|G|2056
9B00|1|2A|A|2057
*
9B00|1|2A|U|2611
9B00|1|2A|C|2612
9B00|1|2A|U|2613
9B00|1|2A|A|2614
9B00|1|2A|U|2615

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22