IL_9B00_267

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCUGUGAACCC*GGGGGAGG

Length

19 nucleotides

Bulged bases

9B00|1|2A|U|2132, 9B00|1|2A|G|2156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B00|1|2A|C|2128
9B00|1|2A|C|2129
9B00|1|2A|U|2130
9B00|1|2A|G|2131
9B00|1|2A|U|2132
9B00|1|2A|G|2133
9B00|1|2A|A|2134
9B00|1|2A|A|2135
9B00|1|2A|C|2136
9B00|1|2A|C|2137
9B00|1|2A|C|2138
*
9B00|1|2A|G|2153
9B00|1|2A|G|2154
9B00|1|2A|G|2155
9B00|1|2A|G|2156
9B00|1|2A|G|2157
9B00|1|2A|A|2158
9B00|1|2A|G|2159
9B00|1|2A|G|2160

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains