IL_9B00_294

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_294 not in the Motif Atlas

Homologous match to IL_8VTW_112

Geometric discrepancy: 0.1778

The information below is about IL_8VTW_112

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

9B00|1|2B|C|30
9B00|1|2B|C|31
*
9B00|1|2B|G|51
9B00|1|2B|A|52
9B00|1|2B|A|53
9B00|1|2B|G|54

Current chains

Chain 2B

5S Ribosomal RNA

Nearby chains

Chain 2G

50S ribosomal protein L5

Chain 2S

50S ribosomal protein L18