IL_9B00_377

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCGAUGGUAC*GGAGAGUAGG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B00|1|2B|C|70
9B00|1|2B|C|71
9B00|1|2B|G|72
9B00|1|2B|A|73
9B00|1|2B|U|74
9B00|1|2B|G|75
9B00|1|2B|G|76
9B00|1|2B|U|77
9B00|1|2B|A|78
9B00|1|2B|C|79
*
9B00|1|2B|G|98
9B00|1|2B|G|99
9B00|1|2B|A|100
9B00|1|2B|G|101
9B00|1|2B|A|102
9B00|1|2B|G|103
9B00|1|2B|U|104
9B00|1|2B|A|105
9B00|1|2B|G|106
9B00|1|2B|G|107

Current chains

Chain 2B

5S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25