IL_9B00_379
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UGCAUGG*UCAGCAUG
- Length
- 15 nucleotides
- Bulged bases
- 9B00|1|2a|C|1054, 9B00|1|2a|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B00_379 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.1533
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9B00|1|2a|U|1052
9B00|1|2a|G|1053
9B00|1|2a|C|1054
9B00|1|2a|A|1055
9B00|1|2a|U|1056
9B00|1|2a|G|1057
9B00|1|2a|G|1058
*
9B00|1|2a|U|1199
9B00|1|2a|C|1200
9B00|1|2a|A|1201
9B00|1|2a|G|1202
9B00|1|2a|C|1203
9B00|1|2a|A|1204
9B00|1|2a|U|1205
9B00|1|2a|G|1206
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2c
- 30S ribosomal protein S3
- Chain 2j
- 30S ribosomal protein S10
- Chain 2n
- 30S ribosomal protein S14 type Z
- Chain 2v
- MF-mRNA
- Chain 2w
- Transfer RNA; tRNA
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