IL_9B0F_021

3D structure

PDB id

9B0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class3 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

9B0F|1|L5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0F|1|L5|A|466
9B0F|1|L5|U|467
9B0F|1|L5|U|468
9B0F|1|L5|C|469
9B0F|1|L5|A|470
9B0F|1|L5|A|471
9B0F|1|L5|C|472
*
9B0F|1|L5|G|682
9B0F|1|L5|C|683
9B0F|1|L5|G|684
9B0F|1|L5|C|685
9B0F|1|L5|A|686
9B0F|1|L5|U|687
9B0F|1|L5|U|688
9B0F|1|L5|U|689

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

60S ribosomal protein L28