IL_9B0F_026

3D structure

PDB id

9B0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class3 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGCGGCCCGG*UCCCCC

Length

16 nucleotides

Bulged bases

9B0F|1|L5|C|501, 9B0F|1|L5|C|502, 9B0F|1|L5|C|503, 9B0F|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0F|1|L5|G|496
9B0F|1|L5|G|497
9B0F|1|L5|C|498
9B0F|1|L5|G|499
9B0F|1|L5|G|500
9B0F|1|L5|C|501
9B0F|1|L5|C|502
9B0F|1|L5|C|503
9B0F|1|L5|G|504
9B0F|1|L5|G|505
*
9B0F|1|L5|U|653
9B0F|1|L5|C|654
9B0F|1|L5|C|655
9B0F|1|L5|C|656
9B0F|1|L5|C|657
9B0F|1|L5|C|658

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18