IL_9B0F_034

3D structure

PDB id

9B0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class3 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9B0F|1|L5|G|748, 9B0F|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0F_034 not in the Motif Atlas

Geometric match to IL_8P9A_248

Geometric discrepancy: 0.2313

The information below is about IL_8P9A_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25001.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9B0F|1|L5|G|745
9B0F|1|L5|A|746
9B0F|1|L5|A|747
9B0F|1|L5|G|748
9B0F|1|L5|G|749
9B0F|1|L5|U|750
9B0F|1|L5|G|751
9B0F|1|L5|G|752
*
9B0F|1|L5|U|911
9B0F|1|L5|G|912
9B0F|1|L5|U|913
9B0F|1|L5|U|914
9B0F|1|L5|A|915
9B0F|1|L5|C|916
9B0F|1|L5|A|917
9B0F|1|L5|G|918
9B0F|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a