IL_9B0F_080

3D structure

PDB id

9B0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class3 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9B0F|1|L5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0F_080 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.1133

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

9B0F|1|L5|G|2001
9B0F|1|L5|A|2002
9B0F|1|L5|G|2003
9B0F|1|L5|U|2004
9B0F|1|L5|G|2005
*
9B0F|1|L5|C|2014
9B0F|1|L5|U|2015
9B0F|1|L5|C|2016

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

60S ribosomal protein L12 [Homo sapiens]