IL_9B0F_105

3D structure

PDB id

9B0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class3 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9B0F|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0F_105 not in the Motif Atlas

Homologous match to IL_8CRE_084

Geometric discrepancy: 0.0805

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9B0F|1|L5|C|2867
9B0F|1|L5|G|2868
9B0F|1|L5|U|2869
9B0F|1|L5|A|2870
9B0F|1|L5|A|2871
9B0F|1|L5|C|2872
*
9B0F|1|L5|G|2877
9B0F|1|L5|G|2878
9B0F|1|L5|A|2879
9B0F|1|L5|U|2880
9B0F|1|L5|A|2881
9B0F|1|L5|A|2882
9B0F|1|L5|G|2883

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA