IL_9B0G_028

3D structure

PDB id

9B0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GCCCGG*UCC

Length

9 nucleotides

Bulged bases

9B0G|1|L5|C|501, 9B0G|1|L5|C|502, 9B0G|1|L5|C|503, 9B0G|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0G_028 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.3935

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9B0G|1|L5|G|500
9B0G|1|L5|C|501
9B0G|1|L5|C|502
9B0G|1|L5|C|503
9B0G|1|L5|G|504
9B0G|1|L5|G|505
*
9B0G|1|L5|U|653
9B0G|1|L5|C|654
9B0G|1|L5|C|655

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18