IL_9B0G_105

3D structure

PDB id

9B0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

9B0G|1|L5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0G_105 not in the Motif Atlas

Geometric match to IL_8P9A_305

Geometric discrepancy: 0.0631

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9B0G|1|L5|G|2847
9B0G|1|L5|G|2848
9B0G|1|L5|A|2849
9B0G|1|L5|A|2850
9B0G|1|L5|G|2851
9B0G|1|L5|U|2852
9B0G|1|L5|C|2853
9B0G|1|L5|G|2854
9B0G|1|L5|G|2855
*
9B0G|1|L5|C|3837
9B0G|1|L5|U|3838
9B0G|1|L5|G|3839
9B0G|1|L5|U|3840
9B0G|1|L5|C|3841

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23