IL_9B0G_235

3D structure

PDB id

9B0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0G_235 not in the Motif Atlas

Homologous match to IL_8P9A_432

Geometric discrepancy: 0.1537

The information below is about IL_8P9A_432

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

9B0G|1|S2|C|1230
9B0G|1|S2|C|1231
9B0G|1|S2|U|1232
*
9B0G|1|S2|G|1526
9B0G|1|S2|C|1527
9B0G|1|S2|G|1528

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SU

40S ribosomal protein S20