IL_9B0H_193

3D structure

PDB id

9B0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class5 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0H_193 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2244

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9B0H|1|S2|C|188
9B0H|1|S2|U|189
9B0H|1|S2|G|190
9B0H|1|S2|A|191
9B0H|1|S2|C|192
*
9B0H|1|S2|G|207
9B0H|1|S2|G|208
9B0H|1|S2|A|209
9B0H|1|S2|U|210
9B0H|1|S2|G|211

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8