IL_9B0J_025

3D structure

PDB id

9B0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating with CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

9B0J|1|L5|G|666, 9B0J|1|L5|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0J_025 not in the Motif Atlas

Geometric match to IL_5J7L_247

Geometric discrepancy: 0.3607

The information below is about IL_5J7L_247

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

9B0J|1|L5|G|487
9B0J|1|L5|G|488
*
9B0J|1|L5|C|665
9B0J|1|L5|G|666
9B0J|1|L5|A|667
9B0J|1|L5|C|668
9B0J|1|L5|C|669

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lr

60S ribosomal protein L28