IL_9B0J_189

3D structure

PDB id

9B0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating with CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

9B0J|1|S2|U|44, 9B0J|1|S2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0J_189 not in the Motif Atlas

Homologous match to IL_8CRE_393

Geometric discrepancy: 0.0878

The information below is about IL_8CRE_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.2

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9B0J|1|S2|G|41
9B0J|1|S2|A|42
9B0J|1|S2|U|43
9B0J|1|S2|U|44
9B0J|1|S2|A|45
9B0J|1|S2|A|46
9B0J|1|S2|G|47
*
9B0J|1|S2|C|479
9B0J|1|S2|G|480
9B0J|1|S2|C|481

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CB

eEF2

Chain SX

40S ribosomal protein S23