IL_9B0N_122

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CUGAAU*GCG

Length

9 nucleotides

Bulged bases

9B0N|1|L5|A|3711, 9B0N|1|L5|A|3712

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0N_122 not in the Motif Atlas

Homologous match to IL_8P9A_315

Geometric discrepancy: 0.3996

The information below is about IL_8P9A_315

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

9B0N|1|L5|C|3708
9B0N|1|L5|U|3709
9B0N|1|L5|G|3710
9B0N|1|L5|A|3711
9B0N|1|L5|A|3712
9B0N|1|L5|U|3713
*
9B0N|1|L5|G|3740
9B0N|1|L5|C|3741
9B0N|1|L5|G|3742

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain S2

Small subunit ribosomal RNA; SSU rRNA