IL_9B0N_210
3D structure
- PDB id
- 9B0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Post-eEF1A-AT-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.92 Å
Loop
- Sequence
- UUA*UA
- Length
- 5 nucleotides
- Bulged bases
- 9B0N|1|S2|U|488
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0N_210 not in the Motif Atlas
- Homologous match to IL_8P9A_396
- Geometric discrepancy: 0.1457
- The information below is about IL_8P9A_396
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
9B0N|1|S2|U|487
9B0N|1|S2|U|488
9B0N|1|S2|A|489
*
9B0N|1|S2|U|511
9B0N|1|S2|A|512
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain AT
- Transfer RNA; tRNA
- Chain CF
- Elongation factor 1-alpha 1
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: