IL_9B0N_230

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GUUC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0N_230 not in the Motif Atlas

Homologous match to IL_8P9A_468

Geometric discrepancy: 0.5513

The information below is about IL_8P9A_468

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0N|1|S2|G|881
9B0N|1|S2|U|882
9B0N|1|S2|U|883
9B0N|1|S2|C|884
*
9B0N|1|S2|G|902
9B0N|1|S2|A|903
9B0N|1|S2|A|904
9B0N|1|S2|C|905

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SL

40S ribosomal protein S11