IL_9B0O_094

3D structure

PDB id

9B0O (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-A/T-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0O_094 not in the Motif Atlas

Homologous match to IL_8CRE_065

Geometric discrepancy: 0.076

The information below is about IL_8CRE_065

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9B0O|1|L5|G|2358
9B0O|1|L5|U|2359
9B0O|1|L5|A|2360
9B0O|1|L5|G|2361
9B0O|1|L5|U|2362
9B0O|1|L5|A|2363
9B0O|1|L5|G|2364
*
9B0O|1|L5|C|3858
9B0O|1|L5|G|3859
9B0O|1|L5|A|3860
9B0O|1|L5|A|3861
9B0O|1|L5|A|3862
9B0O|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17