3D structure

PDB id
9B0P (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human Hibernating class1 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GAC*GC
Length
5 nucleotides
Bulged bases
9B0P|1|L5|A|349
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B0P_015 not in the Motif Atlas
Homologous match to IL_8CRE_014
Geometric discrepancy: 0.1553
The information below is about IL_8CRE_014
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
132

Unit IDs

9B0P|1|L5|G|348
9B0P|1|L5|A|349
9B0P|1|L5|C|350
*
9B0P|1|L8|G|25
9B0P|1|L8|C|26

Current chains

Chain L5
28S rRNA [Homo sapiens]
Chain L8
5.8S rRNA [Homo sapiens]

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LY
60S ribosomal protein L26

Coloring options:


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