IL_9B0P_028

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCCCGG*UCC

Length

9 nucleotides

Bulged bases

9B0P|1|L5|C|501, 9B0P|1|L5|C|502, 9B0P|1|L5|C|503, 9B0P|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_028 not in the Motif Atlas

Geometric match to IL_4WF9_028

Geometric discrepancy: 0.3962

The information below is about IL_4WF9_028

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9B0P|1|L5|G|500
9B0P|1|L5|C|501
9B0P|1|L5|C|502
9B0P|1|L5|C|503
9B0P|1|L5|G|504
9B0P|1|L5|G|505
*
9B0P|1|L5|U|653
9B0P|1|L5|C|654
9B0P|1|L5|C|655

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a