3D structure

PDB id
9B0P (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human Hibernating class1 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
AAGG*CAGCAGCACU
Length
14 nucleotides
Bulged bases
9B0P|1|L5|A|932, 9B0P|1|L5|C|934, 9B0P|1|L5|A|935, 9B0P|1|L5|C|936
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9B0P|1|L5|A|732
9B0P|1|L5|A|733
9B0P|1|L5|G|734
9B0P|1|L5|G|735
*
9B0P|1|L5|C|928
9B0P|1|L5|A|929
9B0P|1|L5|G|930
9B0P|1|L5|C|931
9B0P|1|L5|A|932
9B0P|1|L5|G|933
9B0P|1|L5|C|934
9B0P|1|L5|A|935
9B0P|1|L5|C|936
9B0P|1|L5|U|937

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LM
60S ribosomal protein L14
Chain LS
60S ribosomal protein L18a

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0969 s