IL_9B0P_078
3D structure
- PDB id
- 9B0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating class1 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9B0P|1|L5|C|1935, 9B0P|1|L5|A|2041, 9B0P|1|L5|U|2044, 9B0P|1|L5|G|2045
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0P_078 not in the Motif Atlas
- Homologous match to IL_8P9A_280
- Geometric discrepancy: 0.1489
- The information below is about IL_8P9A_280
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9B0P|1|L5|G|1933
9B0P|1|L5|A|1934
9B0P|1|L5|C|1935
9B0P|1|L5|C|1936
9B0P|1|L5|C|1937
9B0P|1|L5|C|1938
9B0P|1|L5|A|1939
9B0P|1|L5|G|1940
9B0P|1|L5|A|1941
9B0P|1|L5|A|1942
9B0P|1|L5|A|1943
9B0P|1|L5|A|1944
*
9B0P|1|L5|U|2038
9B0P|1|L5|G|2039
9B0P|1|L5|A|2040
9B0P|1|L5|A|2041
9B0P|1|L5|A|2042
9B0P|1|L5|A|2043
9B0P|1|L5|U|2044
9B0P|1|L5|G|2045
9B0P|1|L5|G|2046
9B0P|1|L5|A|2047
9B0P|1|L5|U|2048
9B0P|1|L5|G|2049
9B0P|1|L5|G|2050
9B0P|1|L5|C|2051
9B0P|1|L5|G|2052
9B0P|1|L5|C|2053
Current chains
- Chain L5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LI
- Ribosomal protein uL16-like
- Chain LO
- 60S ribosomal protein L13a
- Chain Lf
- 60S ribosomal protein L35a
- Chain Lm
- Large ribosomal subunit protein eL40
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