IL_9B0P_110

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

9B0P|1|L5|G|2902, 9B0P|1|L5|G|2903, 9B0P|1|L5|U|3595, 9B0P|1|L5|A|3596

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0P|1|L5|G|2901
9B0P|1|L5|G|2902
9B0P|1|L5|G|2903
9B0P|1|L5|U|2904
9B0P|1|L5|C|2905
*
9B0P|1|L5|G|3589
9B0P|1|L5|G|3590
9B0P|1|L5|C|3591
9B0P|1|L5|G|3592
9B0P|1|L5|C|3593
9B0P|1|L5|C|3594
9B0P|1|L5|U|3595
9B0P|1|L5|A|3596
9B0P|1|L5|G|3597
9B0P|1|L5|C|3598

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11