IL_9B0P_113

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9B0P|1|L5|A|3663, 9B0P|1|L5|U|3679, 9B0P|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_113 not in the Motif Atlas

Homologous match to IL_8CRE_088

Geometric discrepancy: 0.0891

The information below is about IL_8CRE_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20047.1

Basepair signature

cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9B0P|1|L5|C|3660
9B0P|1|L5|G|3661
9B0P|1|L5|A|3662
9B0P|1|L5|A|3663
9B0P|1|L5|G|3664
9B0P|1|L5|G|3665
*
9B0P|1|L5|U|3677
9B0P|1|L5|G|3678
9B0P|1|L5|U|3679
9B0P|1|L5|U|3680
9B0P|1|L5|G|3681
9B0P|1|L5|A|3682
9B0P|1|L5|C|3683
9B0P|1|L5|G|3684

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA