IL_9B0P_118

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_118 not in the Motif Atlas

Geometric match to IL_8P9A_317

Geometric discrepancy: 0.0889

The information below is about IL_8P9A_317

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24886.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

9B0P|1|L5|G|3780
9B0P|1|L5|C|3781
*
9B0P|1|L5|G|3811
9B0P|1|L5|C|3812
9B0P|1|L5|A|3813
9B0P|1|L5|U|3814

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain Ln

60S ribosomal protein L41