IL_9B0P_119
3D structure
- PDB id
- 9B0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating class1 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 9B0P|1|L5|A|3785, 9B0P|1|L5|C|3791, 9B0P|1|L5|C|3810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0P_119 not in the Motif Atlas
- Homologous match to IL_8CRE_095
- Geometric discrepancy: 0.0762
- The information below is about IL_8CRE_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
9B0P|1|L5|C|3781
9B0P|1|L5|C|3782
9B0P|1|L5|A|3783
9B0P|1|L5|A|3784
9B0P|1|L5|A|3785
9B0P|1|L5|U|3786
9B0P|1|L5|G|3787
9B0P|1|L5|C|3788
9B0P|1|L5|C|3789
9B0P|1|L5|U|3790
9B0P|1|L5|C|3791
9B0P|1|L5|G|3792
*
9B0P|1|L5|C|3808
9B0P|1|L5|G|3809
9B0P|1|L5|C|3810
9B0P|1|L5|G|3811
Current chains
- Chain L5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: