IL_9B0P_126
3D structure
- PDB id
- 9B0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating class1 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 9B0P|1|L5|G|4084, 9B0P|1|L5|C|4162, 9B0P|1|L5|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0P_126 not in the Motif Atlas
- Homologous match to IL_8CRE_106
- Geometric discrepancy: 0.1111
- The information below is about IL_8CRE_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00555.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
9B0P|1|L5|G|4082
9B0P|1|L5|U|4083
9B0P|1|L5|G|4084
9B0P|1|L5|A|4085
9B0P|1|L5|G|4086
9B0P|1|L5|G|4087
9B0P|1|L5|C|4088
*
9B0P|1|L5|G|4161
9B0P|1|L5|C|4162
9B0P|1|L5|U|4163
9B0P|1|L5|C|4164
Current chains
- Chain L5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LX
- 60S ribosomal protein L23a
Coloring options: