IL_9B0P_129

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

9B0P|1|L5|A|4292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_129 not in the Motif Atlas

Geometric match to IL_7MKY_001

Geometric discrepancy: 0.2155

The information below is about IL_7MKY_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9B0P|1|L5|G|4291
9B0P|1|L5|A|4292
9B0P|1|L5|U|4293
*
9B0P|1|L5|A|4317
9B0P|1|L5|C|4318

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain Lo

60S ribosomal protein L36a