IL_9B0P_151

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

9B0P|1|L5|A|4656, 9B0P|1|L5|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_151 not in the Motif Atlas

Homologous match to IL_8CRE_128

Geometric discrepancy: 0.3148

The information below is about IL_8CRE_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9B0P|1|L5|U|4641
9B0P|1|L5|U|4642
*
9B0P|1|L5|A|4655
9B0P|1|L5|A|4656
9B0P|1|L5|U|4657
9B0P|1|L5|G|4658

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31