IL_9B0P_157

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_157 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.1622

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9B0P|1|L5|G|4769
9B0P|1|L5|U|4770
9B0P|1|L5|C|4771
*
9B0P|1|L5|G|4863
9B0P|1|L5|U|4864
9B0P|1|L5|C|4865

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a