3D structure

PDB id
9B0P (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human Hibernating class1 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GCG*CC
Length
5 nucleotides
Bulged bases
9B0P|1|L5|C|4900
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B0P_162 not in the Motif Atlas
Geometric match to IL_8P9A_297
Geometric discrepancy: 0.3099
The information below is about IL_8P9A_297
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_05642.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

9B0P|1|L5|G|4899
9B0P|1|L5|C|4900
9B0P|1|L5|G|4901
*
9B0P|1|L5|C|4920
9B0P|1|L5|C|4921

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

No other chains within 10Å

Coloring options:


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