3D structure

PDB id
9B0P (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human Hibernating class1 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
9B0P|1|S2|U|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B0P_210 not in the Motif Atlas
Homologous match to IL_8CRE_422
Geometric discrepancy: 0.2907
The information below is about IL_8CRE_422
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_97561.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
129

Unit IDs

9B0P|1|S2|G|606
9B0P|1|S2|U|607
9B0P|1|S2|C|608
*
9B0P|1|S2|G|635
9B0P|1|S2|C|636

Current chains

Chain S2
18S rRNA

Nearby chains

Chain CD
Serbp1
Chain SD
Small ribosomal subunit protein uS3
Chain SJ
40S ribosomal protein S9
Chain Se
Small ribosomal subunit protein eS30

Coloring options:


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