IL_9B0P_228
3D structure
- PDB id
- 9B0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating class1 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- AGGUUC*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0P_228 not in the Motif Atlas
- Homologous match to IL_8P9A_423
- Geometric discrepancy: 0.1034
- The information below is about IL_8P9A_423
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31359.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
9B0P|1|S2|A|1042
9B0P|1|S2|G|1043
9B0P|1|S2|G|1044
9B0P|1|S2|U|1045
9B0P|1|S2|U|1046
9B0P|1|S2|C|1047
*
9B0P|1|S2|G|1071
9B0P|1|S2|U|1072
9B0P|1|S2|U|1073
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain Lp
- 60S ribosomal protein L37a
- Chain SO
- Small ribosomal subunit protein uS11
- Chain Sa
- 40S ribosomal protein S26
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