IL_9B0P_245

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9B0P|1|S2|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_245 not in the Motif Atlas

Homologous match to IL_8CRE_451

Geometric discrepancy: 0.0388

The information below is about IL_8CRE_451

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

9B0P|1|S2|G|1325
9B0P|1|S2|U|1326
9B0P|1|S2|G|1327
*
9B0P|1|S2|C|1502
9B0P|1|S2|C|1503

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29