IL_9B0P_254

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

9B0P|1|S2|C|1434, 9B0P|1|S2|C|1436, 9B0P|1|S2|C|1437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0P|1|S2|U|1408
9B0P|1|S2|A|1409
*
9B0P|1|S2|U|1432
9B0P|1|S2|C|1433
9B0P|1|S2|C|1434
9B0P|1|S2|C|1435
9B0P|1|S2|C|1436
9B0P|1|S2|C|1437
9B0P|1|S2|A|1438

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain SU

40S ribosomal protein S20