IL_9B0P_263

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_263 not in the Motif Atlas

Homologous match to IL_8P9A_454

Geometric discrepancy: 0.1159

The information below is about IL_8P9A_454

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9B0P|1|S2|G|1706
9B0P|1|S2|U|1707
9B0P|1|S2|C|1708
*
9B0P|1|S2|G|1826
9B0P|1|S2|U|1827
9B0P|1|S2|C|1828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41