IL_9B0Q_199

3D structure

PDB id

9B0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-back di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

9B0Q|1|S2|U|368, 9B0Q|1|S2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0Q_199 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.2556

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9B0Q|1|S2|U|366
9B0Q|1|S2|U|367
9B0Q|1|S2|U|368
9B0Q|1|S2|C|369
9B0Q|1|S2|G|370
9B0Q|1|S2|A|371
*
9B0Q|1|S2|U|393
9B0Q|1|S2|G|394

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11