IL_9B0Q_359

3D structure

PDB id

9B0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-back di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGC*GAGCCCCGCGGACGCUACG

Length

43 nucleotides

Bulged bases

9B0Q|1|l5|G|2096, 9B0Q|1|l5|U|2097, 9B0Q|1|l5|A|2253, 9B0Q|1|l5|G|2254, 9B0Q|1|l5|C|2255, 9B0Q|1|l5|C|2266, 9B0Q|1|l5|U|2267, 9B0Q|1|l5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0Q|1|l5|C|2087
9B0Q|1|l5|A|2088
9B0Q|1|l5|G|2089
9B0Q|1|l5|U|2090
9B0Q|1|l5|C|2091
9B0Q|1|l5|G|2092
9B0Q|1|l5|A|2093
9B0Q|1|l5|G|2094
9B0Q|1|l5|A|2095
9B0Q|1|l5|G|2096
9B0Q|1|l5|U|2097
9B0Q|1|l5|G|2098
9B0Q|1|l5|G|2099
9B0Q|1|l5|A|2100
9B0Q|1|l5|C|2101
9B0Q|1|l5|G|2102
9B0Q|1|l5|G|2103
9B0Q|1|l5|G|2104
9B0Q|1|l5|A|2105
9B0Q|1|l5|G|2106
9B0Q|1|l5|C|2107
9B0Q|1|l5|G|2108
9B0Q|1|l5|G|2109
9B0Q|1|l5|C|2110
*
9B0Q|1|l5|G|2252
9B0Q|1|l5|A|2253
9B0Q|1|l5|G|2254
9B0Q|1|l5|C|2255
9B0Q|1|l5|C|2256
9B0Q|1|l5|C|2257
9B0Q|1|l5|C|2258
9B0Q|1|l5|G|2259
9B0Q|1|l5|C|2260
9B0Q|1|l5|G|2261
9B0Q|1|l5|G|2262
9B0Q|1|l5|A|2263
9B0Q|1|l5|C|2264
9B0Q|1|l5|G|2265
9B0Q|1|l5|C|2266
9B0Q|1|l5|U|2267
9B0Q|1|l5|A|2268
9B0Q|1|l5|C|2269
9B0Q|1|l5|G|2270

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lC

60S ribosomal protein L4

Chain lE

Large ribosomal subunit protein eL6

Chain lF

60S ribosomal protein L7

Chain lQ

60S ribosomal protein L18

Chain lb

Large ribosomal subunit protein eL29

Chain lr

60S ribosomal protein L28