IL_9B0Q_479

3D structure

PDB id

9B0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-back di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0Q_479 not in the Motif Atlas

Geometric match to IL_8P9A_367

Geometric discrepancy: 0.2429

The information below is about IL_8P9A_367

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

9B0Q|1|s2|A|533
9B0Q|1|s2|G|534
*
9B0Q|1|s2|C|549
9B0Q|1|s2|C|550
9B0Q|1|s2|U|551

Current chains

Chain s2

18S rRNA [Homo sapiens]

Nearby chains

Chain cH

Endothelial differentiation-related factor 1

Chain se

Small ribosomal subunit protein eS30